PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000223.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 145aa    MW: 16723.3 Da    PI: 9.086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000223.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057294123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C +Cgk F  + + ++H +++
  Itr_sc000223.1_g00023.1 72 FMCRKCGKAFAVRGDWRTHEKNC 94
                             89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.83E-75892No hitNo description
Gene3DG3DSA:3.30.160.603.5E-66892IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8087292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MMMKMHMWGH GSQYRKGPES LRGTQPTAML RLPCFCCAAG CRNNIDHPRP KPLKDFRTLQ  60
THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC TCGSDFKHKR SLKDHIRAFG  120
NGHTACGIDC FDEEDEAASE IEQDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875985.13e-99PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY12e-95ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A061GTW41e-97A0A061GTW4_THECC; C2H2-type zinc finger family protein
TrEMBLK4D9185e-98K4D918_SOLLC; Uncharacterized protein
TrEMBLM1B2851e-97M1B285_SOLTU; Uncharacterized protein
STRINGSolyc11g062060.1.11e-97(Solanum lycopersicum)
STRINGPGSC0003DMT4000354084e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-96C2H2 family protein